Genomes to Life Contractor-Grantee Workshop I
Arlington, Virginia, February
9-12, 2003
Appendix 2: Poster Presenters
Gary Andersen
B51 Development of Vectors for Detecting Protein-Protein Interactions
in Bacteria
Adam Arkin
A4 Rapid Deduction of Stress Response Pathways in Metal/Radionuclide
Reducing Bacteria
Dan Arp
B13 Gene Expression Profiles in Nitrosomonas europaea, an Obligate
Chemolithoautotroph
Jillian F. Banfield
B7 Ecological and Evolutionary Analyses of a Spatially
and Geochemically Confined Acid Mine Drainage Ecosystem Enabled by Community
Genomics
Albert-László Barabási
A26 Hierarchical Organization of Modularity in Metabolic
Networks
John R. Battista
B9 Uncovering the Regulatory Networks Associated with Ionizing
Radiation-Induced Gene Expression in D. radiodurans R1
Mark Borodovsky
A54 Predicting Genes from Prokaryotic Genomes: Are “Atypical”
Genes Derived from Lateral Gene Transfer?
Fred Brockman
B5 Approaches for Obtaining Genome Sequence from Contaminated
Sediments Beneath a Leaking High-Level Radioactive Waste Tank
Michelle Buchanan
A12 New Approaches for High-Throughput Identification
and Characterization of Protein Complexes
William R. Cannon
B61 New Developments in Statistically Based Methods for
Peptide Identification via Tandem Mass Spectrometry
David A. Case
A32 Parallel Scaling in Amber Molecular Dynamics Simulations
Denise Casey
B63 Communicating Genomes to Life
George Church
A2 Microbial Ecology, Proteogenomics, and Computational Optima
James R. Cole
A44 A Web-Based Laboratory Information Management System (LIMS)
for Laboratory Microplate Data Generated by High-Throughput Genomic Applications
Michael Colvin
A56 Advanced Molecular Simulations of E. coli Polymerase
III
Michael J. Daly
B29 The Dynamics of Cellular Stress Responses in Deinococcus
radiodurans
Jonathan Delatizky
A46 BioSketchpad: An Interactive Tool for Modeling Biomolecular
and Cellular Networks
D. A. Dixon
A6 Bioinformatics and Computing in the Genomes to Life Center
for Molecular and Cellular Systems
Timothy Donohue
B41 The Molecular Basis for Metabolic and Energetic Diversity
Norman J. Dovichi
B57 Single Cell Proteomics—D. radiodurans
Ken Downing
B55 Electron Tomography of Whole Bacterial Cells
James K. Fredrickson
B21 Environmental Sensing, Metabolic Response and Regulatory
Networks in the Respiratory Versatile Bacterium Shewanella oneidensis MR-1
George M. Garrity
A36 Towards a Self-Organizing and Self-Correcting Prokaryotic
Taxonomy
Raymond Gesteland
B35 In Search of Diversity: Understanding How Post-Genomic
Diversity is Introduced to the Proteome
Carol S. Giometti
B37 The Microbial Proteome Project: A Database of Microbial
Protein Expression in the Context of Genome Analysis
Carol S. Giometti
B39 Analysis of the Shewanella oneidensis Proteome in Cells
Grown in Continuous Culture
D. K. Gracio
A6 Bioinformatics and Computing in the Genomes to Life Center
for Molecular and Cellular Systems
Caroline S. Harwood
B11 Strategies to Harness the Metabolic Diversity of
Rhodopseudomonas palustris
Grant S. Heffelfinger
A20 Carbon Sequestration in Synechococcus sp.: From
Molecular Machines to Hierarchical Modeling
P. R. Hoyt
A14 Automation of Protein Complex Analyses in Rhodopseudomonas
palustris and Shewanella oneidensis
Gregory B. Hurst
A8 Mass Spectrometry in the Genomes to Life Center for
Molecular and Cellular Systems
David L. Kirchman
B3 A Metagenomic Library of Bacterial DNA Isolated from
the Delaware River
Joel A. Klappenbach
A44 A Web-Based Laboratory Information Management System
(LIMS) for Laboratory Microplate Data Generated by High-Throughput Genomic
Applications
Cheryl R. Kuske
B1 Identification and Isolation of Active, Non-Cultured
Bacteria from Radionuclide and Metal Contaminated Environments for Genome
Analysis
John Leigh
B25 Global Regulation in the Methanogenic Archaeon Methanococcus
maripaludis
Mary S. Lipton
B39 Analysis of the Shewanella oneidensis Proteome in Cells
Grown in Continuous Culture
Derek Lovley
A24 Analysis of the Genetic Potential and Gene Expression of
Microbial Communities Involved in the in situ Bioremediation of Uranium
and Harvesting Electrical Energy from Organic Matter
Derek Lovley
A34 Microbial Cell Model of G. sulfurreducens: Integration
of in silico Models and Functional Genomic Studies
S. Malfatti
B33 Finishing and Analysis of the Nostoc punctiforme Genome
Betty K. Mansfield
B63 Communicating Genomes to Life
Anthony Martino
A16 Analysis of Protein Complexes from a Fundamental Understanding
of Protein Binding Domains and Protein-Protein Interactions in Synechococcus
WH8102
Harley McAdams
A40 Characterization of Genetic Regulatory Circuitry Controlling
Adaptive Metabolic Pathways
Lee Ann McCue
A52 Comparative Genomics Approaches to Elucidate Transcription
Regulatory Networks
Julie C. Mitchell
A48 Molecular Docking with Adaptive Mesh Solutions to
the Poisson- Boltzmann Equation
Karen E. Nelson
B27 Identification of Regions of Lateral Gene Transfer Across
the Thermotogales
Howard Ochman
B19 Lateral Gene Transfer and the History of Bacterial Genomes
Peter J. Ortoleva
A58 Karyote®: Automated Physico-Chemical Cell Model Development
Through Information Theory
Brian Palenik
A18 Carbon Sequestration in Synechococcus: Microarray Approaches
Morey Parang
A60 The Commercial Viability of EXCAVATOR™: A Software Tool
For Gene Expression Data Clustering
D. A. Payne
A6 Bioinformatics and Computing in the Genomes to Life Center for Molecular and Cellular Systems
Haluk Resat
A38 Computational Framework for Microbial Cell Simulations
Mark D. Rintoul
A22 Systems Biology Models for Synechococcus sp.
Diane J. Rodi
B49 Identification of ATP Binding Proteins within Sequenced
Bacterial Genomes Utilizing Phage Display Technology
Margie Romine
A64 Progress in Development of Genetic Tools for Shewanella oneidensis MR-1
Herbert M Sauro
A42 Data Exchange and Programmatic Resource Sharing: The
Systems Biology Workbench, BioSPICE and the Systems Biology Markup Language (SBML)
Margrethe H. Serres
B31 Analysis of Proteins Encoded on the S. oneidensis
MR-1 Chromosome, Their Metabolic Associations and Paralogous Relationships
Christophe H. Schilling
A30 SimPheny: A Computational Infrastructure Bringing
Genomes to Life
David C. Schwartz
B45 Comparative Optical Mapping: A New Approach for Microbial Comparative Genomics
David C. Schwartz
B47 Optical Mapping of Multiple Microbial Genomes
Imran Shah
A28 Computational Elucidation of Metabolic Pathways
Richard D. Smith
B59 Genomes to Proteomes to Life: Application of New Technologies
for Comprehensive, Quantitative and High Throughput Microbial Proteomics
T. P. Straatsma
A62 Modeling Electron Transfer in Flavocytochrome c3 Fumarate
Reductase
F. Robert Tabita
B17 The Rhodopseudomonas palustris Microbial Cell Project
Jerilyn Timlin
A18 Carbon Sequestration in Synechococcus: Microarray Approaches
Wim Vermaas
B43 Integrative Studies of Carbon Generation and Utilization
in the Cyanobacterium Synechocystis sp. PCC 6803
Lawrence P. Wackett
A50 Functional Analysis and Discovery of Microbial Genes
Transforming Metallic and Organic Pollutants: Database and Experimental
Tools
William Whitman
B25 Global Regulation in the Methanogenic Archaeon Methanococcus
maripaludis
H. Steven Wiley
A10 Genomes to Life Center for Molecular and Cellular Systems:
A Research Program for Identification and Characterization of Protein Complexes
David B. Wilson
B15 Genomics of Thermobifida fusca Plant Cell Wall Degradating
Proteins
Jizhong Zhou
B23 Integrated Analysis of Protein Complexes and Regulatory
Networks Involved in Anaerobic Energy Metabolism of Shewanella oneidensis
MR-1
Jizhong Zhou
B53 Development and Use of Microarray-Based Integrated Genomic
Technologies for Functional Analysis of Environmentally Important Microorganisms
Shiguo Zhou
B45 Comparative Optical Mapping: A New Approach for Microbial
Comparative Genomics
Shiguo Zhou
B47 Optical Mapping of Multiple Microbial Genomes
Robin D. Zimmer
A60 The Commercial Viability of EXCAVATOR™: A Software Tool
For Gene Expression Data Clustering
